Abstract: The existing problems on the connection of industry between Fujian and Taiwan were analyzed in this paper, and the countermeasures to solve these problems were put forward accordingly. It is important to grasp the opportunity to expand further our links and economic co-operation with the Taiwan.The concepts should be changed which we should not focus on traditional manufacturing, but focus on introducing modern service industry, such as logistics, financial, trading, tourism, estate, and so on. Meanwhile, we ought to effectively utilize preferential policies of ECFA, take the lead to implementing tariff reductions or zero tariffs between Fujian and Taiwan.