Abstract: Along with the market economic system reform, independent and autonomy consciousness of women was enhanced, and the mainland women NGOs arise.In terms of promoting exchanges across the strait, Fujian women NGOs have unique advantages and special mission.Fujian played important roles in promoting communication between Fujian and Taiwan, creating close relations across the Taiwan Strait.According to the present development of Fujian and Taiwan women NGOs cooperation on the present status and existing problems, this paper puts forward several suggestions to promote cooperation and development of women NGOs in Fujian and Taiwan.