Abstract:  In order to realize the transformation and upgrading of agricultural structure and further speed up the pace of agricultural supply side structural reform, we made an empirical analysis of the regional change of agricultural industrial structure adjustment of Fujian during 20012016 were studied based on location quotient. Analysing of the changing trends of agriculture, forestry, animal husbandry and fishery of three economic areas, southeastern, western and northern Fujian, and nine cities, the results showed that in southeast Fujian, the animal husbandry was adjusted negatively; in the northwestern area, the forestry and animal husbandry were adjusted positively, but the fishery adjusted negatively; and in the northern area, the forestry was with negative adjustment. Therefore, several suggestions were promoted, such as conducting diversified modes of agricultural management, emphasizing on industrial agglomeration, insisting on the leading role of brand, ect.