Abstract: In today’s international trade market, the green barriers have become an effective trade protection tool for countries in the trade of agricultural products, especially for the developed countries, which have greatly affected the export trade of agricultural products in the developing countries. The definition and types of green barriers were firstly introduced in this paper, and then the main causes and impacts of green barriers in Fujian were analyzed based on its export status of agricultural products. Finally, according to the analysis results, the countermeasures on how to deal with the green barriers in the trade of agricultural products in Fujian were put forward.