Abstract: The constructions of the core area of new Maritime Silk Road and the free trade area in Fujian have brought lots of development advantages for the industrial cooperation between Fujian and Taiwan, including funds, resources, human resources, market, etc.Under the background, Fujian and Taiwan should seize the opportunities to expand the cross-strait cooperation in the fields of logistics industry, e-commerce industry, marine fishery industry, financial industry and so on, as well as to promote the optimization & upgrading of the cross-strait industrial structure by relying on the development of “two zones”.Thus the cross-strait industrial cooperation will be further deepened.